Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0672
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    29   2.4  
Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical p...    28   5.5  
AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical...    28   7.3  
U88167-4|AAB42228.3|  452|Caenorhabditis elegans Tetraspanin fam...    27   9.6  
L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical pr...    27   9.6  
L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 354 LSMFC-YECINFLIDFIF*WSSFCSVIVY 437
           +S+FC Y C+   +DF++  + F +V+VY
Sbjct: 313 ISLFCLYTCVAVAVDFVYQLTFFVAVLVY 341


>Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical
           protein F56H6.9 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 336 YNTHCTNHNYTVLHNIVNQVV 274
           +N +CT +N TVL N +NQ++
Sbjct: 356 HNWNCTRNNSTVLENCINQLL 376


>AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical
           protein Y59A8B.13 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 381 LYIHSKTLIKKKRIYYNTHCTNHNYTVLHNIVNQVVSKVSILYLLHLNYTKSEL 220
           L  H     +  R Y ++H T+ + T LHN     +   S  Y+  L  T SE+
Sbjct: 282 LLTHHPPPPQSTRYYVSSHATSSSVTSLHNTSTSSLMTSSTTYVEPLPQTYSEI 335


>U88167-4|AAB42228.3|  452|Caenorhabditis elegans Tetraspanin family
           protein 19 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 324 CTNHNYTVLHNIVNQVVSKVSILYLLHLNYTKSELKSYRMKLLH*TYLF 178
           C N  Y V+   +N + S + I  L+H    K   +++  + LH   LF
Sbjct: 137 CRNPTYVVISTSINFIFSIILITALIHTVILKDNKEAFLKEGLHKKTLF 185


>L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical
           protein ZC21.6a protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 306 TVLHNIVNQVVSKVSILYLLHLNYTKSELKSY 211
           T+L  IV   +S VS ++++HL +++ ++ SY
Sbjct: 133 TILPPIVFYCISVVSYVFIIHLLFSRRKVSSY 164


>L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical
           protein ZC21.6b protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 306 TVLHNIVNQVVSKVSILYLLHLNYTKSELKSY 211
           T+L  IV   +S VS ++++HL +++ ++ SY
Sbjct: 199 TILPPIVFYCISVVSYVFIIHLLFSRRKVSSY 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,377
Number of Sequences: 27780
Number of extensions: 282584
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)