Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0672
(694 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 24 1.6
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 2.8
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.8
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 3.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.8
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 22 4.8
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 6.4
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 6.4
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 22 6.4
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 6.4
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 6.4
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 22 6.4
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 8.4
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 8.4
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 8.4
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 8.4
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 8.4
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 8.4
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 8.4
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 23.8 bits (49), Expect = 1.6
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 610 NS*MNIYILLWGWAYF 657
N+ M +++L WGW F
Sbjct: 223 NAIMGLFVLWWGWLAF 238
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 408 WSSFCSVIVYLPLL*F 455
W S CSV V+L L+ F
Sbjct: 279 WMSSCSVFVFLSLMEF 294
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 2.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 378 YIHSKTLIKKKRIYYNTHCTNHNYTVLHNIVNQVVSKV 265
Y H TL+K KR + + N H I N V ++
Sbjct: 38 YDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQL 75
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 357 IKKKRIYYNTHCTNHNYTVLHNIVN 283
+ K I+ N + N+N + +NI+N
Sbjct: 318 LSNKTIHNNNNYKNYNKKLYYNIIN 342
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -1
Query: 508 YLNYF-YSNSYSHP*NLQQNYN 446
Y NY Y+N+Y++ N NYN
Sbjct: 324 YSNYNNYNNNYNNYNNYNNNYN 345
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2
Query: 348 KRIYYNTHCTNHN 310
K + NTHC N+N
Sbjct: 406 KELIRNTHCVNNN 418
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYN 446
NY YSN ++ N NYN
Sbjct: 88 NYKYSNYNNYNNNYNNNYN 106
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 6.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYN 446
NY YSN ++ N NYN
Sbjct: 88 NYKYSNYNNYNNNYNNNYN 106
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.8 bits (44), Expect = 6.4
Identities = 6/27 (22%), Positives = 14/27 (51%)
Frame = +3
Query: 345 VFFLSMFCYECINFLIDFIF*WSSFCS 425
++ + FC CI+ + + W +C+
Sbjct: 28 MYLVRAFCRNCIHPTVFSVLFWLGYCN 54
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 6.4
Identities = 6/27 (22%), Positives = 14/27 (51%)
Frame = +3
Query: 345 VFFLSMFCYECINFLIDFIF*WSSFCS 425
++ + FC CI+ + + W +C+
Sbjct: 476 MYLVRAFCRNCIHPTVFSVLFWLGYCN 502
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.8 bits (44), Expect = 6.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 539 DCDHFLYYVMNSKLFRARMKVSTIILK*TFTYYFGDGHIFLSNK 670
D + LY++ + + ++T+ L Y G H F+S K
Sbjct: 77 DVLNVLYFINKNDKYEENTILTTMPLLINVVKYLGGKHKFISKK 120
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 21.8 bits (44), Expect = 6.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 560 YVMNSKLFRARMKVSTIILK*TFTYYFGDGHIFLS 664
+++N+++ R+ TIILK T + +FL+
Sbjct: 205 FILNNEIIRSIQGTGTIILKKTVCFVIPIMLLFLA 239
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 8.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 502 NYFYSNSYSHP*NLQQNYNRGKY 434
NY YSN ++ N NY + +Y
Sbjct: 88 NYKYSNYNNYNNNYNTNYKKLQY 110
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,289
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -