Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0671
         (458 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1; ...    59   4e-08
UniRef50_A5Z1D8 Cluster: Putative uncharacterized protein; n=1; ...    42   0.006
UniRef50_A7FPQ7 Cluster: Conserved domain protein; n=3; Clostrid...    33   3.0  
UniRef50_Q48574 Cluster: ORFC; n=2; Leptospira interrogans|Rep: ...    33   3.9  

>UniRef50_A4FSG8 Cluster: Putative uncharacterized protein; n=1;
           Thermobia domestica|Rep: Putative uncharacterized
           protein - Thermobia domestica (firebrat)
          Length = 53

 Score = 59.3 bits (137), Expect = 4e-08
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +2

Query: 134 LIKRKNYLRDNSVIFFFSSNKKKSLRPRCWIKIKFKCRSL 253
           +I R +YLRDNSVIFF +S +++ LRPRCWIKI  +CRSL
Sbjct: 1   MIVRLSYLRDNSVIFFENSYRQERLRPRCWIKILSRCRSL 40


>UniRef50_A5Z1D8 Cluster: Putative uncharacterized protein; n=1;
           Haemaphysalis qinghaiensis|Rep: Putative uncharacterized
           protein - Haemaphysalis qinghaiensis
          Length = 30

 Score = 41.9 bits (94), Expect = 0.006
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 261 ICSIIKILHDLSSNRCEPGWFLS 329
           +CS  +ILHDLS +RCE GWFLS
Sbjct: 8   VCSTFEILHDLSLDRCESGWFLS 30


>UniRef50_A7FPQ7 Cluster: Conserved domain protein; n=3; Clostridium
           botulinum A|Rep: Conserved domain protein - Clostridium
           botulinum (strain ATCC 19397 / Type A)
          Length = 479

 Score = 33.1 bits (72), Expect = 3.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 270 IIKILHDLSSNRCEPGWFLSFNIYNILVRK 359
           IIK+++ L  N CE G+  SFN YN + ++
Sbjct: 284 IIKLINALEDNSCEVGYHYSFNSYNSISKR 313


>UniRef50_Q48574 Cluster: ORFC; n=2; Leptospira interrogans|Rep:
           ORFC - Leptospira interrogans serovar
           Icterohaemorrhagiae
          Length = 85

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 92  LIVYINK*LNDPILLIKRKNYLRDNSVIFFFSSNKKKSLRPRC 220
           + VY NK L D  ++++   + + N + F FS N++++ + RC
Sbjct: 5   ICVYYNKLLYDQKVILRLLEFYKSNYIPFLFSENQRRTRQLRC 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,670,666
Number of Sequences: 1657284
Number of extensions: 4782224
Number of successful extensions: 6751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6751
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)