Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0671
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   4.2  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    25   4.2  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    25   7.3  

>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 219 VGLR*NLNVEV*ILICSIIKILHDLSSNRCEPGW 320
           +G+R N+ + V  L    I +   L  NR  PGW
Sbjct: 2   LGIRKNIRISVNFLQRRTITVKQKLGKNRPLPGW 35


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 134 LIKRKNYLRDNSVIFFFSSNKKKSLRPRCWIKIKFK 241
           ++    Y+R +       + KK+    RCW++ KF+
Sbjct: 245 ILSENFYIRGDGTRVLIVNRKKRVKMYRCWLQAKFQ 280


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 98  VYINK*LNDPILLIKRKNYLRDNSVIFFFSS 190
           + I + L DP L  + K++L  +S++  FSS
Sbjct: 320 ITIEELLRDPFLTERGKHHLTSSSIVTAFSS 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,747
Number of Sequences: 5004
Number of extensions: 22771
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)