Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0671
         (458 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    31   0.37 
At2g38320.1 68415.m04708 expressed protein                             30   0.65 

>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 125 PILLIKRKNYLRDNSVIFFFSSNKKKSLRPRCWIKIKFKCRSLNF 259
           P  L+ R+N  R NS IF  S++ +K+L      +I  K RSL F
Sbjct: 28  PNTLVSRRNVSRANSGIFCSSASGRKTLPQSAIQRIAEKLRSLGF 72


>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 409 SNLIKFNTTQYNCNI*SFRTKIL*ILKDRNQPGSHRFELRSCKILMIEQ 263
           SNLI F   +YN  I  +   +L +  + + P +HRF  R  +I  IE+
Sbjct: 165 SNLITFKALEYNATIDYYWAPLL-VESNSDDPTNHRFPDRIVRIQSIEK 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,369,029
Number of Sequences: 28952
Number of extensions: 101438
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)