Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0670
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    66   6e-12
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    30   0.36 

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 27/49 (55%), Positives = 37/49 (75%)
 Frame = +3

Query: 492 IRILFYILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLI 638
           +  LF   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLV 229



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
 Frame = +1

Query: 304 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 477
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 478 FLTILLGFYFI 510
           ++TI L F F+
Sbjct: 176 YMTIALSFLFL 186



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 RDISREGTYQGKHTILVNKGLR*G 235
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 489 FIRILFYILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIC 641
           ++ I  YIL A  YI ASF ++DR +     +  G   I  I+G + LL C
Sbjct: 325 YMTIPVYILGAATYIAASF-LSDRFHHRGIILIIG--NIFPIVGYILLLAC 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,149
Number of Sequences: 5004
Number of extensions: 36254
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)