Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0670
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   3.2  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.2  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.2  
AL023856-1|CAA19566.1|  327|Caenorhabditis elegans Hypothetical ...    28   5.5  
U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine rece...    27   9.6  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 340 PSRITPFNPFQIPLLNTIIL 399
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 340 PSRITPFNPFQIPLLNTIIL 399
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 340 PSRITPFNPFQIPLLNTIIL 399
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AL023856-1|CAA19566.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.4 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 498 ILFYILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICY 644
           +LF+   A   + +  T  +++  + F I T FHG+   I  ++L  CY
Sbjct: 249 LLFFAPAATGILTSQQTSNEQLEHNLFVITTSFHGVLSTILMIYLQKCY 297


>U64859-7|AAC69095.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein11 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 498 ILFYILQAYEYIEASFTIADRIYGS---TFFIATGFHGIHVIIGTLFLL 635
           +LFYIL   +  +   T   ++      + FI  G HG+ +++ T+FL+
Sbjct: 217 VLFYILNFVKTCQGMSTATIKLQKMMILSLFIQGGIHGLLIMLPTIFLI 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,167
Number of Sequences: 27780
Number of extensions: 188723
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)