Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0670
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    78   6e-15
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   3.9  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   3.9  
At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative (CH...    27   8.9  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +3

Query: 474 IIFNYFIRILFYILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYI 647
           ++    + ++F   Q  EY +A FTI+D IYGSTFF+ATGFHG HVIIGTLFL+IC I
Sbjct: 166 LVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGI 223



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 42/130 (32%), Positives = 58/130 (44%)
 Frame = +1

Query: 304 LSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFL 483
           L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  
Sbjct: 109 LAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVA 168

Query: 484 TILLGFYFIFYKHMNI*KLLLQLLIEFMDPLFS*QQDFMEFM**LGLYFY*FAIFRHLNN 663
           T+LL   F  ++ M   +    +        F     F  F   +G  F      R    
Sbjct: 169 TVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLG 228

Query: 664 HFSKNHHFGF 693
           H +K HH GF
Sbjct: 229 HLTKEHHVGF 238


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 513 LQAYEYIEASFTIADRIYGSTFFIATGFHG 602
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 513 LQAYEYIEASFTIADRIYGSTFFIATGFHG 602
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


>At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative
           (CHX27)  monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 564 YGSTFFIATGFHGIHVIIGTLFLLICYIST 653
           Y +TFF A   + I       FL ICYI+T
Sbjct: 89  YMATFFYARSVYIIESFEAICFLFICYITT 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,034
Number of Sequences: 28952
Number of extensions: 166556
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)