Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0668
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    89   6e-19
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   2.6  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
 Frame = +2

Query: 2   TYNWGTESDDSS-YHNGNS-DPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG 175
           T+NWGTE +    YHNGN  D +G+GH+ I V +++ AC++FE  G+ F K+  DG+MK 
Sbjct: 225 THNWGTEKESGPVYHNGNDGDEKGYGHVCISVDNINAACSKFEAEGLPFKKKLTDGRMKD 284

Query: 176 LAFIQDPDGYWIEI 217
           +AF+ DPD YW+E+
Sbjct: 285 IAFLLDPDNYWVEV 298



 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
 Frame = +2

Query: 2   TYNWGTESDDSS-YHNGNSDP-RGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG 175
           TYN+GTE  +   Y NGN++P RGFGHI   V +++ ACA  E  GV F K+ +DGKMK 
Sbjct: 77  TYNFGTEKKEGPVYINGNTEPKRGFGHICFTVDNIESACAYLESKGVSFKKKLSDGKMKH 136

Query: 176 LAFIQDPDGYWIEIFTSN 229
           +AF  DPD YWIE+ + +
Sbjct: 137 IAFALDPDNYWIELVSQS 154


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 639 SIAHRGQHWLWFPPKLP 589
           +IAHRG +W W P   P
Sbjct: 175 AIAHRGYYWSWSPSTWP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,098
Number of Sequences: 5004
Number of extensions: 61288
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)