Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0668
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619... 131 6e-31
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 43 2e-04
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 41 8e-04
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 35 0.053
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 35 0.053
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 34 0.093
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 3.5
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 29 4.6
11_01_0032 - 249808-250788 28 8.0
>05_03_0361 -
12961101-12961201,12961683-12961772,12961910-12961980,
12962079-12962158,12962264-12962324,12963620-12963681,
12963826-12963833,12964273-12964609,12964946-12965089,
12965235-12965339
Length = 352
Score = 131 bits (316), Expect = 6e-31
Identities = 56/78 (71%), Positives = 66/78 (84%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 TYNWGTESDDS--SYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG 175
T+NWGTE+D YHNGNSDPRGFGHIG+ V DV AC RFE+LGV+F+K+P+DGKMKG
Sbjct: 265 THNWGTENDPEFKGYHNGNSDPRGFGHIGVTVHDVYKACERFERLGVEFVKKPDDGKMKG 324
Query: 176 LAFIQDPDGYWIEIFTSN 229
+AFI+DPDGYWIEIF N
Sbjct: 325 IAFIKDPDGYWIEIFDLN 342
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 TYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG-- 175
TYN+G + D GFGH GI V DV G K + P G +KG
Sbjct: 139 TYNYGVDKYDIG--------AGFGHFGIAVDDVAKTVELIRAKGGKVTREP--GPVKGGK 188
Query: 176 --LAFIQDPDGYWIEI 217
+AF++DPDGY EI
Sbjct: 189 TVIAFVEDPDGYKFEI 204
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 TYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG-- 175
TYN+G ES Y G + FGH GI V DV + G + P G +KG
Sbjct: 143 TYNYGVES----YDIGTA----FGHFGIAVEDVAKTVDLIKAKGGTVTREP--GPVKGGK 192
Query: 176 --LAFIQDPDGYWIEI 217
+AFI+DPDGY E+
Sbjct: 193 SVIAFIEDPDGYKFEL 208
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 35.1 bits (77), Expect = 0.053
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 47 GNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRP---NDGKMKGLAFIQDPDGYWIEI 217
G+ DP HI D+ + R ++G++++KR +G F +DPDG+ IEI
Sbjct: 113 GDLDPMD-NHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEI 171
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 20 ESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKR--PNDGKMKGLAFIQD 193
E +S N +P+ HI ++ R +++GV++++R G F D
Sbjct: 74 EDPESMPPNKEINPKD-NHISFTCESMEAVQRRLKEMGVRYVQRRVEEGGVYVDQIFFHD 132
Query: 194 PDGYWIEIFT 223
PDG+ IEI T
Sbjct: 133 PDGFMIEICT 142
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 34.3 bits (75), Expect = 0.093
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 TYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDGKMKG-- 175
TYN+G + D GFGH I DV + + I R G +KG
Sbjct: 80 TYNYGVDKYDIG--------AGFGHFAIATEDVYKLAEKIKSSCCCKITR-EPGPVKGGS 130
Query: 176 --LAFIQDPDGYWIEI 217
+AF QDPDGY E+
Sbjct: 131 TVIAFAQDPDGYMFEL 146
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 ESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKR--PNDGKMKGLAFIQD 193
E DS +P+ HI + R ++LG+ +I+R G F D
Sbjct: 75 EDPDSLPGKTEINPKD-NHISFQCESMVAVERRLKELGIPYIQRCVEEGGIYVDQIFFHD 133
Query: 194 PDGYWIEI 217
PDG+ IEI
Sbjct: 134 PDGFMIEI 141
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 180 ARPFILPSLGRLINLTPSCSNLAHATSTSGTSIP 79
ARPF + +++ PSC +A +T+ TS P
Sbjct: 298 ARPFYMHLPATTLSMCPSCERVASNPATASTSAP 331
>11_01_0032 - 249808-250788
Length = 326
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -1
Query: 293 GLMSGFPCVTPVSSIQYTF 237
G+++G C+TP S+I+Y+F
Sbjct: 293 GMITGLVCITPRSNIKYSF 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,057
Number of Sequences: 37544
Number of extensions: 359834
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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