Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0668
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18121| Best HMM Match : Glyoxalase (HMM E-Value=4.5e-09)            81   8e-16
SB_32605| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   3e-15
SB_3339| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             28   6.2  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            28   8.2  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   8.2  

>SB_18121| Best HMM Match : Glyoxalase (HMM E-Value=4.5e-09)
          Length = 188

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 32/51 (62%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
 Frame = +2

Query: 8   NWGTESDDS-SYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPN 157
           NWGTE+D + S+HNGNS+P+GFGHIG+ VPDV  AC RF+ LG+ F+K+P+
Sbjct: 136 NWGTENDPNFSHHNGNSEPKGFGHIGVAVPDVYKACERFDNLGIPFVKKPD 186


>SB_32605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
 Frame = +2

Query: 8   NWGTESDDS-SYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDG 163
           NWGTE+D + S+HN NS+P+GFGHIG+ VPDV  AC RF+ LG+ F+K+P+ G
Sbjct: 135 NWGTENDPNFSHHNFNSEPKGFGHIGVAVPDVYKACERFDNLGIPFVKKPDGG 187


>SB_3339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 171 FILPSLGRLINLTPSCSNLAHATSTSGTSIP 79
           FI+PSL  + NL    +NL H T  + T++P
Sbjct: 41  FIIPSLELIANLWMRSANLHHGTGGARTTLP 71


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 356  DCLIQQYCKTLNKYRHFVGMAGLMSGFP--CVTPVSSIQY 243
            DCL Q+Y KT  KY+         SG+P  CVT     QY
Sbjct: 1086 DCLFQEYIKTFLKYKQEA------SGWPAWCVTEAEKQQY 1119


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 135 TPSCSNLAHATSTSG--TSIPICP 70
           T SC+N+  +T+TSG  T+I +CP
Sbjct: 629 TNSCTNVKDSTNTSGSSTTIDVCP 652


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 135 TPSCSNLAHATSTSG--TSIPICP 70
           T SC+N+  +T+TSG  T+I +CP
Sbjct: 135 TNSCTNVKDSTNTSGSSTTIDVCP 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,662,742
Number of Sequences: 59808
Number of extensions: 435755
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)