Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0668
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    28   7.2  

>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +2

Query: 83  ILVPDVDVACARFEQLGVKFIKRPNDGKM-KGLAFIQDPDGYWIEIFTSNVV*MCTVLKI 259
           I++P V VAC  +    + F K  +DG + +G+    +    W+            ++ +
Sbjct: 214 IVMPIVYVACLAYNSDQLAFSKEASDGNLQRGVCSWHEKSETWVHEEAPLREEDAFLVNL 273

Query: 260 PV*HMESHSSIQPY-QQNAYIYSKFYNIAVL 349
           PV  MES   +  + ++ A +    YN+ +L
Sbjct: 274 PVHQMESFKRLLLFAKEQANVSLLIYNVYLL 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,308,384
Number of Sequences: 27780
Number of extensions: 349833
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)