Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0F0D7 Cluster: Sensor protein; n=1; Mariprofundus ferr...    35   1.6  
UniRef50_Q5W433 Cluster: Sialic-acid binding protein-4 precursor...    33   5.0  
UniRef50_UPI00006CD8F6 Cluster: ATPase, histidine kinase-, DNA g...    33   8.8  
UniRef50_A5E0K4 Cluster: Predicted protein; n=1; Lodderomyces el...    33   8.8  

>UniRef50_Q0F0D7 Cluster: Sensor protein; n=1; Mariprofundus
           ferrooxydans PV-1|Rep: Sensor protein - Mariprofundus
           ferrooxydans PV-1
          Length = 386

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 583 DVPKKLLSDKRSEILCDTPDNIPDNALQRPSVERFAR 693
           D+ K+ +S+K+  ++CD PD++PD  +   S ER  R
Sbjct: 249 DMLKEPVSNKKISLICDIPDDLPDMRMDVDSFERVVR 285


>UniRef50_Q5W433 Cluster: Sialic-acid binding protein-4 precursor;
           n=11; Clupeocephala|Rep: Sialic-acid binding protein-4
           precursor - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 651

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 577 NEDVPKKLLSDKRSEILCDTPDNIPD 654
           N DVP++++SD+  ++ C  PDN PD
Sbjct: 143 NIDVPEEIVSDQSLDLTCYVPDNCPD 168


>UniRef50_UPI00006CD8F6 Cluster: ATPase, histidine kinase-, DNA gyrase
            B-, and HSP90-like domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: ATPase, histidine
            kinase-, DNA gyrase B-, and HSP90-like domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1363

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 469  QQTVVERXDIFTSLPLFDFVISKHFNIGDFFNASNLYGLD 350
            Q+T+    D+     +FD V+SK FN  +  N  N Y LD
Sbjct: 1322 QETIANDPDLKEDFKVFDVVLSKPFNEQEIINTINQYFLD 1361


>UniRef50_A5E0K4 Cluster: Predicted protein; n=1; Lodderomyces
           elongisporus NRRL YB-4239|Rep: Predicted protein -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 369

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = +1

Query: 139 IDFEMDEIRDSIENVRNNESSDTDNEKRD 225
           ++ E+D+I +++ + RNNE+ + DNEKR+
Sbjct: 147 LEREIDQILNNVGDRRNNENEEEDNEKRE 175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,509,993
Number of Sequences: 1657284
Number of extensions: 9762663
Number of successful extensions: 28645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28622
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)