Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    27   0.19 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   7.2  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.6  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -1

Query: 478 HKLQQTVVERXDIFTSLPLFDFVISKHFNIGDFFNASNLYGLDAKLLLVTPSFLVDFRVV 299
           + LQ+  V++  IF +LP  +  + +  N   +FN   ++G +   +L    F V   ++
Sbjct: 118 YHLQKINVQQSGIFINLPFLEHNLIRLKNCVIYFN--RIFGWN---ILFGHIFTVCRTLI 172

Query: 298 LIDD-VDGASPRKSVSSSK 245
            IDD V G   + +++SSK
Sbjct: 173 YIDDNVKGLGKQYNIASSK 191


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 623 ISERLSDNSFFGTSSFSEIGPRAGLRNTGLLFSLSMLP 510
           I E+  ++    T+   EI  R   R+ GLL ++S+LP
Sbjct: 178 IDEKAEEHKEQFTALVREI--RNAFRHDGLLLTMSVLP 213


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 478 DVIEEKAHFDAGNMLRLNRSPV 543
           DVI    HF A     LNR  +
Sbjct: 479 DVINHFPHFTAARFFDLNRKTI 500


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,973
Number of Sequences: 336
Number of extensions: 2343
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)