Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   5.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.9  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    25   7.9  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   7.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 460 RSAEACDVIEEKAHFDAGNMLRLNRSPVFRSPARGPISENEDV 588
           RSAE+        HF    + +L   P   SP++ P+SE E++
Sbjct: 287 RSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKPVSELEEL 329


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 213  RETRHGLIRFHLEEETDL 266
            RET H L+R +L ++TDL
Sbjct: 1581 RETGHQLVRINLSDQTDL 1598


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 514 NMLRLNRSPVFRSPARGPISENEDVPKKLLSDKRS 618
           +M  L RSP F   A   +   E  P+KL S+K S
Sbjct: 307 SMFELERSPYFTGSAIAALRFLESFPEKLPSEKVS 341


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 563 PRAGLRNTGLLFSLSMLPASKCAFSSMTSQASADRRRAKXHFHVP 429
           P  G +N    F+ S LP+S    +   S A+ D   A  HF  P
Sbjct: 299 PYNGYQNDAASFAHSKLPSSANPNTPFNSTATVDVGAAGSHFPYP 343


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -1

Query: 310 FRVVLIDDVDG------ASPRKSVSSSK*NLISPCLVSRYRYRSIRCCERSRSNHEFRPF 149
           F+++++D+ D       A+ R+++ S    +   CL+  Y  R I       S + F+P 
Sbjct: 124 FKIIILDEADSMTQDAQAALRRTMESYA-RITRFCLICNYMTRIIDPLSSRCSKYRFKPL 182

Query: 148 RNRFFIRVVTF 116
            N   ++ + F
Sbjct: 183 DNENMVKRLEF 193


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 109 FCQK*QLE*KIDFEMDEIRDSIENVRNNESSDTDNEKRDTGLLDFIWKRK 258
           F +  +LE  +    D+ R +++++RN ESS   + ++   LLD I+  K
Sbjct: 108 FYEMAELENYLIDRYDQYRMTLKSIRNIESSVQPSREKKQKLLDQIYALK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,150
Number of Sequences: 5004
Number of extensions: 43384
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)