Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171     32   0.38 
08_02_0626 - 19443797-19443917,19444136-19444761                       31   0.66 
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    30   1.5  
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771...    29   4.6  
10_08_0065 + 14596257-14597417                                         28   8.1  

>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
          Length = 916

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = -3

Query: 686 NLSTDGRCNALSGILSGVSQRISERLSDNSFFGTSSFSEIGPRAGLRNTGLLFSLSMLPA 507
           +L ++G    +S  ++ ++     +LS+NSF G    SE+G    LRN  L  +   +P 
Sbjct: 80  DLPSEGIIGPISPCIANITSLTRLQLSNNSFHGGIP-SELGLLNQLRNLNLSRNSLEVPP 138

Query: 506 SKCAFSSMTSQASAD 462
           S    SS+TS  +A+
Sbjct: 139 SLFNMSSLTSLVAAN 153


>08_02_0626 - 19443797-19443917,19444136-19444761
          Length = 248

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 463 SAEACDVI--EEKAHFDAGNMLRLNRSPVFRSPARGPISE 576
           S E CDV    E++ +DA  ++   RSPVFR+   GP+++
Sbjct: 164 SKEGCDVTFQVERSDYDAHRVVLSARSPVFRAQFFGPMAD 203


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 565 PISENEDVPKKLLSDKRSEILCDTPDNIPDNALQRPSVE 681
           PISE++D+  + L  K  +  CD+ DN   +  +  S+E
Sbjct: 70  PISESDDINSESLPTKDDDYNCDSDDNSASHMKRSESIE 108


>02_05_1227 -
           35076047-35076217,35076737-35076797,35077038-35077123,
           35077213-35077301,35077685-35077766,35078094-35078136,
           35078211-35078284,35078492-35078561,35078747-35078816,
           35079275-35079369,35079473-35079549,35080725-35080760
          Length = 317

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 692 LANLSTDGRCNALSGILSGVSQR 624
           LA  STDG+C  LS  + GV  R
Sbjct: 119 LATTSTDGKCRVLSTFIKGVDTR 141


>10_08_0065 + 14596257-14597417
          Length = 386

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 463 SAEACDVIEE--KAHFDAGNMLRLNRSPVFRSPARGPISENEDVPKKLLSDKRSEI 624
           S EA DV  +  K  FDA  ++   RSPVF++   G + E+       + D   E+
Sbjct: 187 SKEAADVEFQVGKKVFDAHRLVLAARSPVFKAELYGRMKESTTKSAIAIDDMEEEV 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,509
Number of Sequences: 37544
Number of extensions: 262008
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)