Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)                   29   4.7  
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          28   6.2  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   8.3  
SB_110| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.3  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 539 GLLFSLSMLPASKCAFSSMTSQASAD 462
           G L S+SM+P   CAF   TS+A+A+
Sbjct: 328 GELRSISMVPRQNCAFVCFTSRAAAE 353


>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
          Length = 582

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 457 RRSAEACDVIEEKAHFDAGNMLRLNRSP--VFRSPARGPISENEDV 588
           R+  +  D  E+  +  AGN+   NRSP  + R P RGP S+ E +
Sbjct: 468 RKKKKLTDDSEDSDYGQAGNVSECNRSPPILRRMPPRGP-SKGEQI 512


>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 166 DSIENVRNNESSDTDNEKRDTGLLDFIWKRKRTYE 270
           +SI+   NN   + D ++R    +D++W +KR+ +
Sbjct: 390 NSIKQYMNNHKVNNDLQERVISWIDYMWHKKRSLD 424


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +3

Query: 342  SLASSPYRLEALKKS------PILKCFDITKSNSGRDVKMSFRST 458
            S A + Y++ A+KKS       ++  + + KSN GRDV  S R T
Sbjct: 1640 STALNAYQISAIKKSCFRALPVVVAIYPLDKSNRGRDVSGSRRPT 1684


>SB_110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 553 PARGPISENEDVPKKLLSDKRSEILCDTPDNIPDN 657
           P + P    ED+P ++  D    I  D PD+IPD+
Sbjct: 34  PDKVPDKIQEDMPDEIKEDIPDGIQDDMPDDIPDD 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,763
Number of Sequences: 59808
Number of extensions: 315454
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)