Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   5.2  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   9.1  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   9.1  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 379 FNASNLYGLDAKLLLVTPSFLVDFRVVLIDDVDGASPRKSVSSSK*NLISPCLVSRYRYR 200
           F+ SN   LD  +   + SF++   VV +  V    P    +      +     + YR+ 
Sbjct: 368 FHCSNFISLDEAVCSFS-SFMLQAFVVCVP-VQRPKPNPPWADRTLKRLKRVKRAAYRHY 425

Query: 199 SIRCCERSRS 170
             R C+RSRS
Sbjct: 426 QTRRCQRSRS 435


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 181 RSRSNHEFRPFRNRFFIRVV 122
           RS S H+  PF  R F+ ++
Sbjct: 335 RSTSTHKMSPFVRRLFLEIM 354


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 148  EMDEIRDSIENVRNNESSDTDNEKRD 225
            E+ E+R+ +E  R +    T+  KRD
Sbjct: 2951 ELRELREELEARRYDRDMSTETSKRD 2976


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,039
Number of Sequences: 2352
Number of extensions: 9039
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)