Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF250045-1|AAG17620.1|  246|Caenorhabditis elegans thioredoxin-l...    28   7.3  
AF125955-2|AAD14719.1|  246|Caenorhabditis elegans Dumpy : short...    28   7.3  
AC006713-1|AAK68407.2|  310|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF250045-1|AAG17620.1|  246|Caenorhabditis elegans thioredoxin-like
           protein DPY-11 protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 361 YGLDAKLLLVTPSFLVDFRVVLIDDVDGASPRKSVSSSK 245
           YGL A + L     L  F V++ID V    PRKS  + K
Sbjct: 176 YGLFAGVTLALGCVLGFFIVIIIDQVFPTGPRKSQQAKK 214


>AF125955-2|AAD14719.1|  246|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 11 protein.
          Length = 246

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 361 YGLDAKLLLVTPSFLVDFRVVLIDDVDGASPRKSVSSSK 245
           YGL A + L     L  F V++ID V    PRKS  + K
Sbjct: 176 YGLFAGVTLALGCVLGFFIVIIIDQVFPTGPRKSQQAKK 214


>AC006713-1|AAK68407.2|  310|Caenorhabditis elegans Hypothetical
           protein Y119D3A.4 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 420 SISLYRNILI*AIFLTLPIYTDSMLSFYW*RRVF 319
           +ISL+R++ I  I L LP++    L   W R +F
Sbjct: 147 TISLHRDLSIDDIVLILPLFNSQTLRKLWIRGIF 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,751
Number of Sequences: 27780
Number of extensions: 235606
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)