Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0667
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    31   0.96 
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    31   0.96 
At1g73130.1 68414.m08456 expressed protein                             29   3.9  
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    28   6.8  
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea...    28   6.8  

>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 526 LNRSPVFRSPARGPISENEDVPKKLLSDKRSEILCDTPDNIPDNALQR 669
           LN   VF +  RGPI + E + ++ L+    E + D   +  +NAL R
Sbjct: 154 LNAGNVFGAEDRGPIPKWESIIRRTLNKSNKESVYDQSPSCNNNALHR 201


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 526 LNRSPVFRSPARGPISENEDVPKKLLSDKRSEILCDTPDNIPDNALQR 669
           LN   VF +  RGPI + E + ++ L+    E + D   +  +NAL R
Sbjct: 154 LNAGNVFGAEDRGPIPKWESIIRRTLNKSNKESVYDQSPSCNNNALHR 201


>At1g73130.1 68414.m08456 expressed protein
          Length = 646

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = +1

Query: 469 EACDVIEEKAHFDAGNMLRLNRSPVFRSPARGPISENEDVPKKLLSDKRSEILCDTPDNI 648
           E+ +V E+ +    G   R+  SP   SP+  P  +N D+P  +L +KR +      D +
Sbjct: 50  ESKEVAEDHSSNVQGRHDRV-ASPRSESPSDPPSHQNFDIPGHVLVEKRVQ-----GDIL 103

Query: 649 PDNALQRPSVE 681
            +N +QR S E
Sbjct: 104 KENVVQRDSFE 114


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 654 IRNIVRSITEDLGAFIRQ*FLWNVLVLXNRSSRRTSEYGTPVQP 523
           +R+   S  ED+  F    F+++V+V  N   +R  +YG    P
Sbjct: 36  LRSTDSSRKEDINPFKPPAFIFSVMVKSNSQGKRNPQYGLEANP 79


>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 692 LANLSTDGRCNALSGILSGVSQRISERLSDNSFF 591
           LA  STDG+C   S  + GV  + +  L + +FF
Sbjct: 160 LATTSTDGKCRVFSTFIKGVDTKYAHYL-NGAFF 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,220
Number of Sequences: 28952
Number of extensions: 219079
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)