Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0666
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.3  
UniRef50_Q821X2 Cluster: Putative uncharacterized protein; n=7; ...    35   2.2  
UniRef50_Q9D127 Cluster: 18-day embryo whole body cDNA, RIKEN fu...    33   6.7  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    33   6.7  
UniRef50_Q00YL1 Cluster: Meiotic cell division protein Pelota/DO...    33   8.8  
UniRef50_A1DEN7 Cluster: ABC transporter, putative; n=4; Pezizom...    33   8.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 524 AGWLYLPARTHKWSYHQ*LRKL*FCGFDFRW 616
           A W YLPARTHK SYH+   +  +CG    W
Sbjct: 569 AEWWYLPARTHKRSYHR--YQCSYCGVTAAW 597


>UniRef50_Q821X2 Cluster: Putative uncharacterized protein; n=7;
           Chlamydiaceae|Rep: Putative uncharacterized protein -
           Chlamydophila caviae
          Length = 450

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -1

Query: 185 SALRSRIDATLFTYVPTLIQYGTFII-YFC*ET*NEIHLNKHLFYLIIRKNFNVLKIAII 9
           SAL SR    LF  +P++    +FI+ YFC ++   I L+  ++YLI RK FN     +I
Sbjct: 198 SALSSR---ALFIILPSVKWNNSFILKYFCWKSIIAILLSTTIYYLIFRKEFNNFPKVVI 254

Query: 8   S 6
           +
Sbjct: 255 N 255


>UniRef50_Q9D127 Cluster: 18-day embryo whole body cDNA, RIKEN
           full-length enriched library, clone:1110032J02
           product:Transient receptor protein 7, full insert
           sequence; n=3; Mus musculus|Rep: 18-day embryo whole
           body cDNA, RIKEN full-length enriched library,
           clone:1110032J02 product:Transient receptor protein 7,
           full insert sequence - Mus musculus (Mouse)
          Length = 305

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = -3

Query: 300 ISTTDINSVTRVNKVRLVQVMSYKRIRRNTARGSDAARFRTTVTHRRYVIYIRTNP--NS 127
           + T  +NSV+ +  VR  + +S   +RRN     +   +   + H R V+++  NP   +
Sbjct: 44  VITLSVNSVSTLEPVRSCRRLSELYLRRNRIPSLNELFYLKDLPHLR-VLWLAENPCCGT 102

Query: 126 IWHVYNLFLLRNL 88
             H+Y + +LRNL
Sbjct: 103 SPHLYRMTVLRNL 115


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 406 PIDIYDVNAPPTLRYKF 456
           P  +YDVNAPPT RYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191


>UniRef50_Q00YL1 Cluster: Meiotic cell division protein
           Pelota/DOM34; n=2; Ostreococcus|Rep: Meiotic cell
           division protein Pelota/DOM34 - Ostreococcus tauri
          Length = 442

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -3

Query: 258 VRLVQVMSYKRIRRNTARGSDAARFRTTVT----HRRYVIYIRTNPNSIWHVYNL 106
           VR +++ S  R     A+G   AR R T+T      R +  I  NP+ IWHVYNL
Sbjct: 39  VRAMKITS--RAFERDAKGWIKARARRTLTIAPFASRAIQVIPENPDDIWHVYNL 91


>UniRef50_A1DEN7 Cluster: ABC transporter, putative; n=4;
           Pezizomycotina|Rep: ABC transporter, putative -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 1617

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 653 DICQVISRHIHSTNENQTRKIIICV-ITGGRTTCESARVGTTTLPISAVSVW 501
           D+ Q ++ H  + +  Q RK+ + + +TGG + C    V +   PI+   +W
Sbjct: 592 DLAQKVNSHSKTLSGGQKRKVQLAIMLTGGSSICAVDEVSSGIDPIARAKIW 643


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,189,816
Number of Sequences: 1657284
Number of extensions: 12770701
Number of successful extensions: 28278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28268
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)