Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0666
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540...    32   0.38 
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    28   6.2  

>06_02_0072 +
           11152988-11153102,11153581-11153705,11153860-11154004,
           11154219-11154284,11154418-11154540,11154839-11154961,
           11156065-11156193,11156510-11156632,11156737-11156838,
           11156943-11157065,11157169-11157270,11157370-11157492,
           11157791-11157913,11158209-11158331,11158633-11158761,
           11160210-11161039
          Length = 867

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 133 RVGTYVNNVASMRDRSAETGSVASARRVP-PYPLIA-HYLHQPYLVNTCHAVYICCRYS 303
           R G Y  NV S+R+ SA  GS +S+   P P  ++A H L  PY V  CH+      Y+
Sbjct: 732 RRGRY--NVTSVRELSAMAGSGSSSSSEPAPAAVVACHDLTYPYAVFYCHSTKPTAAYA 788


>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 456 LRSQV*LQRLPHLLNPNAHGRNRQGGCTY 542
           LR+   L   P LL+P+   R+RQGGC +
Sbjct: 5   LRASPFLSPPPPLLHPSRRRRHRQGGCIH 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,161
Number of Sequences: 37544
Number of extensions: 339425
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)