Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0666
         (695 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001629-1|AAN71384.1|  805|Drosophila melanogaster RE37929p pro...    29   8.0  
AE014297-4755|AAN14274.1|  833|Drosophila melanogaster CG1499-PB...    29   8.0  
AE014297-4754|AAF57159.1|  833|Drosophila melanogaster CG1499-PA...    29   8.0  

>BT001629-1|AAN71384.1|  805|Drosophila melanogaster RE37929p
           protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 252 LVQVMSYKRIRRNTARGSDAARFRTTVTHRRYV 154
           L  ++SY R +R+   G+D A F  +  HRR V
Sbjct: 626 LKSLVSYGRKKRSVLNGTDGAEFLISTRHRRDV 658


>AE014297-4755|AAN14274.1|  833|Drosophila melanogaster CG1499-PB,
           isoform B protein.
          Length = 833

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 252 LVQVMSYKRIRRNTARGSDAARFRTTVTHRRYV 154
           L  ++SY R +R+   G+D A F  +  HRR V
Sbjct: 626 LKSLVSYGRKKRSVLNGTDGAEFLISTRHRRDV 658


>AE014297-4754|AAF57159.1|  833|Drosophila melanogaster CG1499-PA,
           isoform A protein.
          Length = 833

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 252 LVQVMSYKRIRRNTARGSDAARFRTTVTHRRYV 154
           L  ++SY R +R+   G+D A F  +  HRR V
Sbjct: 626 LKSLVSYGRKKRSVLNGTDGAEFLISTRHRRDV 658


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,216,843
Number of Sequences: 53049
Number of extensions: 587336
Number of successful extensions: 1264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)