Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0666
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-16|CAH10818.1|  304|Caenorhabditis elegans Hypothetical...    27   9.7  
AL110487-15|CAH10817.1|  307|Caenorhabditis elegans Hypothetical...    27   9.7  
AL110487-14|CAB54432.1|  395|Caenorhabditis elegans Hypothetical...    27   9.7  

>AL110487-16|CAH10818.1|  304|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3c protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 606 SNPQNYNLRNYWW*DHL*VRAGRY 535
           + P NYN RNY W +H  VR G +
Sbjct: 163 TEPFNYNGRNYNWDNHGQVRNGEF 186


>AL110487-15|CAH10817.1|  307|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3b protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 606 SNPQNYNLRNYWW*DHL*VRAGRY 535
           + P NYN RNY W +H  VR G +
Sbjct: 163 TEPFNYNGRNYNWDNHGQVRNGEF 186


>AL110487-14|CAB54432.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39E4B.3a protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 606 SNPQNYNLRNYWW*DHL*VRAGRY 535
           + P NYN RNY W +H  VR G +
Sbjct: 163 TEPFNYNGRNYNWDNHGQVRNGEF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,389
Number of Sequences: 27780
Number of extensions: 303362
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)