Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0665
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   9.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 489 FFKLNILTYHNDNEVKYH 436
           F+K+N   YH D    +H
Sbjct: 434 FYKMNHPVYHKDPHYGFH 451


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 271 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 393
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 271 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 393
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 271 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 393
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 271 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 393
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 390 FYLKLRLISFLFI*VRGTLPRYRYDKLIY 476
           FY     I  +F   + TLPRY  ++L Y
Sbjct: 399 FYRWHSYIDDIFQEYKATLPRYTENQLNY 427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,358
Number of Sequences: 336
Number of extensions: 924
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)