Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0665
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 323 EYSAKKIKANPPLLYSILNPETNLFHLQQNQKEFDLF 213
           E +A   + N  L+Y+IL P    + L + +   DL+
Sbjct: 744 ERAADMKRRNGALIYNILPPHVAAYFLSRARHHDDLY 780


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 320 YSAKKIKANPPLLYSILNPETNLFHLQQNQKEFDL 216
           +SA+   +N P  Y   +P T+L  L    +  DL
Sbjct: 33  HSAESSASNSPDHYERFSPSTHLMDLSSPPEHRDL 67


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 334 FIRMILVIINMGGYNL 381
           FIR++LVI+   GY L
Sbjct: 54  FIRIVLVILLRAGYVL 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,123
Number of Sequences: 438
Number of extensions: 1221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)