Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0664
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   101   1e-22
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    33   0.041
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.2  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   8.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.1  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  101 bits (241), Expect = 1e-22
 Identities = 45/85 (52%), Positives = 59/85 (69%)
 Frame = +1

Query: 10  HTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTF 189
           HTGP+L  +D+ IN L+++Y PN VLVIID KPK +GLPT AY A++E+ DDG+ +SRTF
Sbjct: 103 HTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTF 162

Query: 190 EHVPSEIXXXXXXXXXXXHLLRISR 264
            H+PS I           HLLR +R
Sbjct: 163 VHLPSSIEAEEAEEIGVEHLLRDTR 187



 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 34/70 (48%), Positives = 49/70 (70%)
 Frame = +3

Query: 234 GSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQL 413
           G    ++D +D +VG+L+ R+T Q   L+GL  +LTEI DYL +V  G LP+NH I+ +L
Sbjct: 178 GVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAEL 237

Query: 414 QDIFNLLPDI 443
           Q +FNLLP+I
Sbjct: 238 QSVFNLLPNI 247


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 32.7 bits (71), Expect = 0.041
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +3

Query: 228 RSGSRAFVKDIKDTT-VGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQII 404
           RSG +A      D + + SL   +         L S +  + DY+  V  GS P N  + 
Sbjct: 190 RSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVG 249

Query: 405 YQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVVYL 509
             L   F+L+P +   +F         D  +VVYL
Sbjct: 250 RYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYL 284


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 73  PNSVLVIIDAKPKDLGLPT-EAYQAVEEVHDD 165
           P+  L + D+KP+ LG+ T + Y    +V DD
Sbjct: 567 PDHTLRVKDSKPESLGIDTVKQYTGYLDVEDD 598


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 396  QIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSL 497
            +I+  L D+F+LLP+ AN  F+D L +   + SL
Sbjct: 1459 KIVRALIDLFHLLPNNAN-RFMDELLICVVEFSL 1491


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 333 QLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 470
           +++  R Y   + +       Q+I  L  + N+LP +  D   DNL
Sbjct: 193 RISAARAYSAVILESKQSTRDQVIPLLPSLMNILPPLQQDRDSDNL 238


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 55  LIRRYCPNSVLVIIDAKPKDLGLPTEAYQ 141
           LIR Y  N +  IID   +D G+  E+++
Sbjct: 907 LIRIYLQNGIQSIIDVPIRDAGIFVESFE 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,846
Number of Sequences: 5004
Number of extensions: 40332
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)