Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0664
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 99 1e-21
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 48 7e-06
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 30 1.2
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 29 2.1
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 29 3.6
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 28 4.8
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 99 bits (238), Expect = 1e-21
Identities = 45/92 (48%), Positives = 65/92 (70%)
Frame = +3
Query: 234 GSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQL 413
G ++D+KDTT+ +L+ +T++L LKGL ++L EIR YL V +G LP+NH+I+Y L
Sbjct: 163 GVEHLLRDVKDTTISTLATEVTSKLAALKGLDARLREIRGYLDLVIEGKLPLNHEILYHL 222
Query: 414 QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYL 509
QD+FNLLP++ + I VKTND LV+YL
Sbjct: 223 QDVFNLLPNLNVNELIKAFAVKTNDMMLVIYL 254
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/25 (60%), Positives = 23/25 (92%)
Frame = +2
Query: 509 AALVRSIIALHNLINNKITNRDAEE 583
++L+RS+IALHNLINNK+ N++ E+
Sbjct: 255 SSLIRSVIALHNLINNKMLNKEHEK 279
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +3
Query: 213 CRGG*RSGSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYL 359
C GG G + D+KDTT+G+L+ +T++L LKGL ++L EIR YL
Sbjct: 572 CCGG---GVEHLLMDVKDTTIGTLATEVTSKLAALKGLDARLREIRRYL 617
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 67 YCPNSVLVIIDAKPKD 114
Y PN VLVIID +PK+
Sbjct: 552 YVPNPVLVIIDVQPKE 567
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 30.3 bits (65), Expect = 1.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -1
Query: 231 FFSLLCTNFTWNMFKGPRSWCTIIVYFL 148
F++++C W +GP+ W ++YF+
Sbjct: 440 FWNIICVTAAWIKGEGPKIWFLAVIYFI 467
>07_03_1696 -
28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 339 TEIRDYLVQVGQGS-LPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTND-QSLVVYLL 512
+ I +Y Q + + H+II +++D N I++ N + NLY+ +D L+V LL
Sbjct: 671 SSIEEYFYQKQHATCMDHAHEIIRRIRDDANKSEPISDSNVVSNLYLSNDDIAKLLVPLL 730
>08_01_0509 +
4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 258 IKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYL 359
+ +T + LS+ + ++ LKG+HSQ+ RD L
Sbjct: 12 VMNTVLSKLSKMLEDKYTKLKGVHSQIAFFRDEL 45
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 252 KDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNL 431
K K T V + R+ ++ + H + TEI V++ + P N I + +F
Sbjct: 388 KMTKSTNVEVIVDRMIEYMINITDHHYK-TEIASRCVELAEQFAPSNQWFIQTMNKVFEH 446
Query: 432 LPDIANDNFIDNL 470
D+ N NL
Sbjct: 447 AGDLVNIRVAHNL 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,821,650
Number of Sequences: 37544
Number of extensions: 249986
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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