Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0664
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)              113   1e-25
SB_16297| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   3.7  
SB_15397| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/92 (57%), Positives = 70/92 (76%)
 Frame = +3

Query: 234 GSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQL 413
           G    ++DIK+ T G+LSQRITNQL  LKGLH++L +IRDYL +V    LP+NH IIY+L
Sbjct: 160 GVEHLLRDIKNLTAGTLSQRITNQLTSLKGLHARLGDIRDYLEKVATKKLPVNHTIIYEL 219

Query: 414 QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYL 509
           QD+FNLLP++  ++F   + VKTNDQ LVVY+
Sbjct: 220 QDVFNLLPNLDIEDFCKAVTVKTNDQMLVVYV 251



 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 41/58 (70%), Positives = 45/58 (77%)
 Frame = +1

Query: 82  VLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXXHLLR 255
           VLVIIDAKPKDL LPT+AY AVEEVHDDGTPT++TFEH+PSEI           HLLR
Sbjct: 109 VLVIIDAKPKDLRLPTDAYVAVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLR 166



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/25 (80%), Positives = 25/25 (100%)
 Frame = +2

Query: 509 AALVRSIIALHNLINNKITNRDAEE 583
           A+L+RSIIALHNLI+NK+TNRDAE+
Sbjct: 252 ASLIRSIIALHNLISNKVTNRDAEK 276


>SB_16297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 279 SLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNF 458
           ++S  +  Q   +K LH+++  I +Y+  V  G  P NH+I+     +   LP +  D F
Sbjct: 397 TVSDHLLAQYNAIKMLHARVKMIMEYVKAVKAGEAPCNHEIMRDALSLCQRLPVMKTDIF 456

Query: 459 IDNLY 473
             + Y
Sbjct: 457 KGDFY 461



 Score = 35.9 bits (79), Expect = 0.024
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 279 SLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNF 458
           ++S  +  Q   +K LH+++  I +Y+  V  G  P NH+I+     +   LP +  D F
Sbjct: 500 TVSDHLLAQYNAIKMLHARVKMIMEYVKAVKAGEAPCNHEIMRDALSLCQRLPVMKTDIF 559

Query: 459 IDNLY 473
             + Y
Sbjct: 560 KGDFY 564


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 257  YQGYHCGQSFTAYH*PVARLKRSSLTIDRN*RLPCSG--WAGLLANEPPDYLP 409
            Y+GY+C  + TA   PV     SS   D +  LPC    W  +     P   P
Sbjct: 3323 YRGYYCPLNETAIPCPVMTFSNSSEAKDMSTCLPCPAGYWCNIKGLADPSISP 3375


>SB_15397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 279 SLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQ 398
           SL   +      L  +HS + E RDY  Q+   +  M H+
Sbjct: 24  SLKSEVNTMKTDLSSMHSDMKEARDYYHQLDLSAATMGHR 63


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 279 SLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQ 398
           SL   +      L  +HS + E RDY  Q+   +  M H+
Sbjct: 190 SLKSEVNTMKTDLSSMHSDMKEARDYYHQLDLSAATMGHR 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,550
Number of Sequences: 59808
Number of extensions: 297607
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)