Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0664
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   123   8e-29
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z70309-3|CAA94357.2|  358|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z68750-4|CAA92968.3|  256|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    27   7.4  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    27   7.4  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  123 bits (297), Expect = 8e-29
 Identities = 55/82 (67%), Positives = 65/82 (79%)
 Frame = +1

Query: 10  HTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTSRTF 189
           HTGPKLH+NDIAINE ++R+CPN VLVIIDA+PK++GLPTEAY  V+EVHDDGTP  +TF
Sbjct: 129 HTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKNIGLPTEAYIEVQEVHDDGTPPIKTF 188

Query: 190 EHVPSEIXXXXXXXXXXXHLLR 255
           EHVPS+I           HLLR
Sbjct: 189 EHVPSDIGAEEAEEVGVEHLLR 210



 Score =  104 bits (250), Expect = 4e-23
 Identities = 46/92 (50%), Positives = 68/92 (73%)
 Frame = +3

Query: 234 GSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQL 413
           G    ++DIKD T G+LSQRIT+QL+GL+GL SQL  I  YL  + +G+LP+NH +IY +
Sbjct: 204 GVEHLLRDIKDQTAGTLSQRITDQLMGLRGLQSQLESIEKYLHDIVRGTLPVNHHVIYYV 263

Query: 414 QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYL 509
           Q++ NLLPD+ + ++I +  V+TNDQ + VY+
Sbjct: 264 QEVLNLLPDVTHPDYIVSQNVQTNDQLMCVYM 295



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/36 (47%), Positives = 25/36 (69%)
 Frame = +2

Query: 476 QNQ*SITCGIFAALVRSIIALHNLINNKITNRDAEE 583
           Q    + C    +LVRS++ALHNLI+NKI+ + AE+
Sbjct: 285 QTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEK 320


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 252 KDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLP-MNHQIIYQLQDIFN 428
           +D++DT+ G +S   T +      +HS L +  +++V   Q   P M  ++I++    F 
Sbjct: 241 QDLRDTSKGKISSSFTLESTTKSSIHSLLIDEHNWVVDQIQKKFPDMGLELIFEEARKF- 299

Query: 429 LLPDIANDNFIDNLYVKTNDQSLVVY 506
           ++ ++ +  F   L +   D+++  Y
Sbjct: 300 VIAELQHITFEQFLPILLGDETMKKY 325


>Z70309-3|CAA94357.2|  358|Caenorhabditis elegans Hypothetical
           protein R102.3 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 222 LLCTNFTWNMFKGPRSW 172
           +L TNF WNMF+  + W
Sbjct: 106 ILKTNFMWNMFERSKKW 122


>Z68750-4|CAA92968.3|  256|Caenorhabditis elegans Hypothetical
           protein K01A6.5 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 246 FVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIF 425
           F K+ KDTT+      IT Q    +   S++TE++    +VG  S P+ +QI  +   IF
Sbjct: 25  FKKEKKDTTLEITPPGITPQPQCSR--QSRMTEVQQKRKEVGTESSPVKNQIPRECFHIF 82


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 393 HQIIYQLQDIFNLLPD 440
           H  IYQ+ D+ NLLPD
Sbjct: 29  HPCIYQIYDLLNLLPD 44


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 393 HQIIYQLQDIFNLLPD 440
           H  IYQ+ D+ NLLPD
Sbjct: 29  HPCIYQIYDLLNLLPD 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,236
Number of Sequences: 27780
Number of extensions: 223554
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)