Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0664
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 164 MVHQLRGPLNMFQVKLVQRRLKKWE*SIC*GYQGYHCGQSF 286
           + H LRG  N++  KL+  R  K E S       Y CG  F
Sbjct: 621 LYHVLRGNENIYSGKLISMRHLKEEVSSI--ETNYECGLRF 659


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 199  EHVQRSSKLVYHHRVLPLLL 140
            EH     +L  HHR LP +L
Sbjct: 1089 EHGAAGLRLCLHHRDLPCVL 1108


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 352 SLISVNCE*RPFKPSNWLV 296
           +L S  CE RPF+P +  V
Sbjct: 410 ALTSGKCEHRPFEPKSTAV 428


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 115 LGLPTEAYQAVEEVHD 162
           LGL TE YQAV+E+HD
Sbjct: 330 LGL-TE-YQAVKEMHD 343


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 64  RYCPNSVLVIIDAKPKDL 117
           ++C N+ +V  D KPK++
Sbjct: 169 QFCHNAGIVHADVKPKNI 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,923
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)