Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0664
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 99 2e-21
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 98 3e-21
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 40 0.001
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa... 31 0.57
At4g02050.1 68417.m00275 sugar transporter, putative similar to ... 28 5.3
At3g31940.1 68416.m04044 hypothetical protein 28 5.3
At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar ... 27 9.2
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/92 (47%), Positives = 64/92 (69%)
Frame = +3
Query: 234 GSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQL 413
G ++D+KDTT+ +L+ +T +L LKGL ++L EIR YL V +G LP+NH+I+Y L
Sbjct: 179 GVEHLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHL 238
Query: 414 QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYL 509
QD+FNLLP++ + + VKTND LV+YL
Sbjct: 239 QDVFNLLPNLNVNELVKAFSVKTNDMMLVIYL 270
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 TGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTS-RTF 189
TGPKL +ND+ ++ L Y PN VLVIID +PK+LG+PT+AY AVEEV ++ T S + F
Sbjct: 104 TGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVF 163
Query: 190 EHVPSEIXXXXXXXXXXXHLLR 255
HV +EI HLLR
Sbjct: 164 VHVSTEIAAHEVEEIGVEHLLR 185
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/25 (60%), Positives = 23/25 (92%)
Frame = +2
Query: 509 AALVRSIIALHNLINNKITNRDAEE 583
++L+RS+IALHNLINNK+ N++ E+
Sbjct: 271 SSLIRSVIALHNLINNKLLNKEHEK 295
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 98.3 bits (234), Expect = 3e-21
Identities = 44/92 (47%), Positives = 64/92 (69%)
Frame = +3
Query: 234 GSRAFVKDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQL 413
G ++D+KDTT+ +L+ +T +L LKGL ++L EIR YL V +G LP+NH+I+Y L
Sbjct: 179 GVEHLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRTYLDLVIEGKLPLNHEILYHL 238
Query: 414 QDIFNLLPDIANDNFIDNLYVKTNDQSLVVYL 509
QD+FNLLP++ + + VKTND LV+YL
Sbjct: 239 QDVFNLLPNLNVNELVKAFAVKTNDMMLVIYL 270
Score = 86.2 bits (204), Expect = 1e-17
Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +1
Query: 13 TGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTPTS-RTF 189
TGPKL +ND+ ++ L Y PN VLVIID +PK+LG+PT+AY AVEEV ++ T S + F
Sbjct: 104 TGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQQVF 163
Query: 190 EHVPSEIXXXXXXXXXXXHLLR 255
HVP+EI HLLR
Sbjct: 164 VHVPTEIAAHEVEEIGVEHLLR 185
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/25 (56%), Positives = 23/25 (92%)
Frame = +2
Query: 509 AALVRSIIALHNLINNKITNRDAEE 583
++L+RS+IALH+LINNK+ N++ E+
Sbjct: 271 SSLIRSVIALHSLINNKLLNKEHEK 295
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +3
Query: 249 VKDIKDTTVGSLSQRITNQLLGL----KGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQ 416
V +K + GS + ++ L G+ K L+S++ + L + +G ++ ++ Q+
Sbjct: 193 VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLRQVS 252
Query: 417 DIFNLLPDIANDNFIDNLYVKTNDQSLVVYLLL 515
+ LP + ++ F DN ++ ND+ L+ YL +
Sbjct: 253 SLLRRLPAMESERFQDNFLMEYNDKLLITYLAM 285
>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 717
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 10 HTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEV 156
H+ L ++ +NEL R NS+L + KP+ L PT A++A E++
Sbjct: 646 HSDDSLRSLEVELNELSRIKPRNSILNRTEDKPEQL-TPTSAWRAAEKL 693
>At4g02050.1 68417.m00275 sugar transporter, putative similar to
SP|Q10710 Sugar carrier protein A {Ricinus communis},
glucose transporter [Saccharum hybrid cultivar H65-7052]
GI:347855; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 513
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 231 FFSLLCTNFTWNMFKGPRSWCTIIVYFLYCLVSFSR*TKIFRFSINNYKH*IW 73
F LLC F + +F W T++ F+Y L+ ++ I ++ KH W
Sbjct: 443 FLGLLCA-FKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFW 494
>At3g31940.1 68416.m04044 hypothetical protein
Length = 208
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +3
Query: 291 RITNQLLGLKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNL 470
+I + L +H+QL E DY+ + +HQ Y ++ + L+ +D+F + +
Sbjct: 5 KIAGIMAKLNAIHNQLVEDVDYVHSRDFPNQRFDHQQGYIVESEYELVKIEESDDF-EVV 63
Query: 471 YVKTNDQSLVVY 506
+ND +L VY
Sbjct: 64 EAVSNDTTLGVY 75
>At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar to
guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
thaliana]; identical to cDNA putative guanylate cyclase
GI:21436486
Length = 274
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 64 RYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVH 159
+YC ++ D K +D GLP+ ++ V VH
Sbjct: 32 KYCLFDDPLVSDGKYRDAGLPSSSHMDVPHVH 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,252,850
Number of Sequences: 28952
Number of extensions: 205310
Number of successful extensions: 419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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