Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0663
         (350 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CXW3 Cluster: Chromosome undetermined scaffold_30, wh...    31   4.1  
UniRef50_UPI00006CFB77 Cluster: TPR Domain containing protein; n...    31   7.2  
UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2; Eukar...    31   7.2  
UniRef50_Q9MSR8 Cluster: Maturase K; n=85; Coniferales|Rep: Matu...    31   7.2  

>UniRef50_A0CXW3 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=5; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 890

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +2

Query: 131 FHQIFNQSLKTIFKASTHNIHLNLANVFE*TNILVKQNEAFLSSKRILCKVI 286
           F +I  Q  + I+KAS +N  L + N  E   I     E FL   R LCK+I
Sbjct: 425 FDKIKYQQNQLIYKASFNNSVLLMINKRECDEIYKYYGEIFLYKHRTLCKII 476


>UniRef50_UPI00006CFB77 Cluster: TPR Domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 754

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 158 KTIFKASTHNI-HLNLANVFE*TNILVKQNEAFLSSKRILCK 280
           +T+F+   +    + L  + + T IL+K NE +LS K I+CK
Sbjct: 654 ETVFELMENYFDQIPLEKIIDVTKILIKNNEEWLSEKIIVCK 695


>UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2;
            Eukaryota|Rep: DNA-directed RNA polymerase -
            Dictyostelium discoideum AX4
          Length = 1130

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 249  ASFCLTNMLVYSNTFAKFK-CILCVDALKI 163
            ASFCL + L+ S+ FAK K C LC   L I
Sbjct: 1050 ASFCLNDRLMKSSDFAKIKVCKLCGSTLTI 1079


>UniRef50_Q9MSR8 Cluster: Maturase K; n=85; Coniferales|Rep:
           Maturase K - Amentotaxus argotaenia (Chinese flowering
           yew)
          Length = 509

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 128 FFHQIFNQSLKTIFKASTHNIHLNLANVFE*TNILVKQNEAFLSSKRILCKV 283
           F +QIF         A  H+ HL+ ++ FE T IL+    +FL+ KR++ ++
Sbjct: 18  FLYQIF---FGEDLNAMVHDHHLDRSSSFERTEILISNYFSFLTVKRLIRRI 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,819,680
Number of Sequences: 1657284
Number of extensions: 4119862
Number of successful extensions: 7012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7012
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)