Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0663
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   2.6  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    24   6.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   7.9  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    24   7.9  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 22  NVAINYKNISNFFHGTRKCK*KFET*NVKHRYLLNFFSSNF*SITKNN 165
           N  + YKNI N F  +R    + E  N+K    +  F SNF   +K N
Sbjct: 14  NNELLYKNIRNLFSTSRSFPIEQEWMNLKSISQMKDFFSNFPGNSKAN 61


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 279 LHNILLELRNASFCLTNMLVYSNTFAKFKC 190
           L ++++   NAS+CL  + +  N+  K  C
Sbjct: 220 LPSMIIPWNNASYCLITIDLGGNSIVKMNC 249


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 113 DIS*TFFHQIFNQSLKTIFKASTHNI-HLN 199
           DIS   F+ ++NQS+  I +    +I H+N
Sbjct: 361 DISSAIFYSVWNQSIAAIIRREKVDIYHIN 390


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = +2

Query: 173 ASTHNIHLNLAN-VFE 217
           A  HN+HL+LAN +FE
Sbjct: 736 ALNHNVHLHLANMIFE 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,943
Number of Sequences: 5004
Number of extensions: 20968
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)