Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0663
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    29   1.4  
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606     27   4.1  
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467...    26   9.6  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    26   9.6  

>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 253 KCFILFN*YVSLFKYICQVQMYIMC 179
           K +I     +S+ KY CQV+M +MC
Sbjct: 264 KAYIRITSKISVSKYFCQVRMMLMC 288


>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
          Length = 873

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 282 TLHNILLELRNASFCLTNMLVYSNTFAKFKCI 187
           TL N  LELRN+   L+N+   S T   FKC+
Sbjct: 720 TLKN--LELRNSGILLSNIECSSLTSLSFKCV 749


>04_04_1683 +
           35345506-35345581,35346171-35346343,35346706-35346739,
           35346919-35347055,35347356-35347422,35347645-35347744,
           35348375-35348538,35349023-35349069,35349177-35349224,
           35349463-35349976,35350190-35350278,35350472-35350549,
           35350972-35351019
          Length = 524

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 128 FFHQIFNQSLKTIFKASTHNIHLNLANVFE*TNI 229
           FF  I N+      ++S H+I++NL ++F   N+
Sbjct: 319 FFANIINRVSDISQQSSEHSININLNDIFNHANV 352


>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
            32412430-32413478,32414690-32416371,32416477-32416586,
            32417634-32418430,32418839-32418951,32419147-32419194,
            32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 270  ILLELRNASFCLTNMLVYSNTFAKF-KCILCV 178
            +LLE +N S CL +  V SN  A F  C  C+
Sbjct: 1186 LLLEAKNNSLCLLSSYVQSNRPAVFPTCAHCL 1217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,170,949
Number of Sequences: 37544
Number of extensions: 96162
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)