Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0663
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...    26   8.7  

>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
           protein F11C1.5b protein.
          Length = 1339

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 179 THNIHLNLANVFE*TNILVKQNEAFLSSKR 268
           T    LN ANVF  T I  K+NE FL   R
Sbjct: 651 TFEHELNTANVFNDTTIRTKENEKFLDMIR 680


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
           protein F11C1.5a protein.
          Length = 1804

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 179 THNIHLNLANVFE*TNILVKQNEAFLSSKR 268
           T    LN ANVF  T I  K+NE FL   R
Sbjct: 651 TFEHELNTANVFNDTTIRTKENEKFLDMIR 680


>Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical
           protein T16H12.8 protein.
          Length = 363

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 225 LVYSNTFAKFKCILCVDALKIVFSD*LKI**KKVQEISMLYISRFKFSL 79
           ++YSN F  F  I+    L +V++    +   +    S L++S+F+ S+
Sbjct: 225 IIYSNNFLYFHNIIVATTLILVYACLCTLWSSREMNTSSLHVSKFQRSI 273


>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 168 LKHPHIIYI*TWQMYLNKLTY*LNKMKHFLVLREYYV 278
           LK  ++  +  W   ++KLT  LNK+ H L+L+E  V
Sbjct: 444 LKKANVEQLDVWASNVHKLTDTLNKVSH-LILKEQMV 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,272,107
Number of Sequences: 27780
Number of extensions: 113987
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)