Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0663
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    27   3.5  
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    27   3.5  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    26   8.1  

>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 264 LELRNASFCLTNMLVYSNTFAKFKCILC 181
           LE+++ S+   ++ +YS+ FA   CI C
Sbjct: 142 LEIKHPSYPFQSLQLYSSPFALVNCICC 169


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 264 LELRNASFCLTNMLVYSNTFAKFKCILC 181
           LE+++ S+   ++ +YS+ FA   CI C
Sbjct: 64  LEIKHPSYPFQSLQLYSSPFALVNCICC 91


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 125 TFFHQIFNQSLKTIFKASTHNIHLNLANVFE 217
           +F H +F  SLK + ++  +++ L+   +FE
Sbjct: 378 SFGHSVFRDSLKRVCQSGENDLGLSSCGIFE 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,567,196
Number of Sequences: 28952
Number of extensions: 92359
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)