Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0662
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CTV0 Cluster: Chromosome undetermined scaffold_27, wh...    34   3.8  
UniRef50_Q4XW05 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  

>UniRef50_A0CTV0 Cluster: Chromosome undetermined scaffold_27, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_27,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 881

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -1

Query: 363 VNFICSGYSCFLLLTSSTRKRKKFEKK 283
           VNFI  G+SC  L+T +TR  K F+KK
Sbjct: 686 VNFISLGFSCLELITPATRISKLFDKK 712


>UniRef50_Q4XW05 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 72

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 572 NFCIVHFFSIFSISVENFILLLLAIFVKRDTKFLLHVLMYRY 447
           NF I HFF+ FS  + +F+ L   I++ +   + + +L+Y Y
Sbjct: 3   NFIIFHFFTYFSFILVSFLCLFHPIYIHKYLMYSILLLIYIY 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,913,842
Number of Sequences: 1657284
Number of extensions: 9494463
Number of successful extensions: 20635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20632
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)