Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0662
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887...    29   3.5  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    29   4.6  

>05_05_0114 -
           22488172-22488279,22488414-22488511,22488616-22488784,
           22489310-22489377,22490485-22490521,22490660-22490741,
           22490845-22490903
          Length = 206

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 554 FFSIFSISVENFILLLLAIFVKRDTKFLLHVLMYRYTK 441
           FF  FS+S  +F++ +LA++     K  LHV   R +K
Sbjct: 158 FFGKFSMSYHSFLVAVLAVYPFLWMKLYLHVFKQRRSK 195


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 617 HYMAYYLLSNFWFLTSV 667
           HY  ++L +NFWFLT V
Sbjct: 395 HYRIHFLKANFWFLTIV 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,821
Number of Sequences: 37544
Number of extensions: 238856
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)