Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0662
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       30   1.5  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   2.7  
SB_52303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 460 NT*SKNFVSLFTKIARRRSMKFSTLIENIEKKCTMQKFYNIMHKRYI 600
           +T SKN+++L  K+    S  +STL +N     T+ K Y+ + K Y+
Sbjct: 92  STLSKNYLTLSIKVLNTLSKNYSTLSKNY---LTLSKNYSTLSKNYL 135



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 469 SKNFVSLFTKIARRRSMKFSTLIENIEKKCTMQKFYNIMHKRYI 600
           SKN+++L  K+    S  +STL  N     T+ K Y+ + K Y+
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNY---LTLSKNYSTLSKNYL 42



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +1

Query: 463 T*SKNFVSLFTKIARRRSMKFSTLIEN-----IEKKCTMQKFYNIMHKRYI 600
           T SKN+++L  K+    S  +STL +N     I+   T+ K Y+ + K Y+
Sbjct: 71  TLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYL 121


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 460 NT*SKNFVSLFTKIARRRSMKFSTLIENIEKKCTMQKFYNIMHKRY 597
           +T SKN+++L  K+    S  +STL +N     T+ K Y+ + K Y
Sbjct: 92  STLSKNYLTLSIKVLNTLSKNYSTLSKNY---LTLSKNYSTLSKNY 134



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 469 SKNFVSLFTKIARRRSMKFSTLIENIEKKCTMQKFYNIMHKRYI 600
           SKN+++L  K+    S  +STL  N     T+ K Y+ + K Y+
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNY---LTLSKNYSTLSKNYL 42



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +1

Query: 463 T*SKNFVSLFTKIARRRSMKFSTLIEN-----IEKKCTMQKFYNIMHKRYI 600
           T SKN+++L  K+    S  +STL +N     I+   T+ K Y+ + K Y+
Sbjct: 71  TLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYL 121


>SB_52303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = -1

Query: 561 CALLLYILYKCGK----FHTPPPRNFRKKGY 481
           C LLL ILY+C K    F T PP    +K Y
Sbjct: 15  CCLLLLILYQCLKAGLFFKTEPPERPNEKDY 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,472
Number of Sequences: 59808
Number of extensions: 311702
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)