Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0662
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001546-1|AAN71301.1|  386|Drosophila melanogaster RE10780p pro...    29   7.9  
AE014296-2725|AAN11751.1|  386|Drosophila melanogaster CG4729-PC...    29   7.9  
AE014296-2724|AAN11750.1|  386|Drosophila melanogaster CG4729-PB...    29   7.9  
AE014296-2723|AAF49471.1|  386|Drosophila melanogaster CG4729-PA...    29   7.9  

>BT001546-1|AAN71301.1|  386|Drosophila melanogaster RE10780p
           protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 584 IML*NFCIVHFFSIFSISVENFILLLLAIFVKRDTKFLLHVLMYRYTKQHSYV*LKFIS 408
           + L + CI   F    + + NFI LL+ +F+K   K L   LMY Y     Y  L F+S
Sbjct: 10  LRLIHLCIALTFFTSGLCI-NFIQLLMHVFIKPIDKRLFRKLMY-YACYSLYSQLIFVS 66


>AE014296-2725|AAN11751.1|  386|Drosophila melanogaster CG4729-PC,
           isoform C protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 584 IML*NFCIVHFFSIFSISVENFILLLLAIFVKRDTKFLLHVLMYRYTKQHSYV*LKFIS 408
           + L + CI   F    + + NFI LL+ +F+K   K L   LMY Y     Y  L F+S
Sbjct: 10  LRLIHLCIALTFFTSGLCI-NFIQLLMHVFIKPIDKRLFRKLMY-YACYSLYSQLIFVS 66


>AE014296-2724|AAN11750.1|  386|Drosophila melanogaster CG4729-PB,
           isoform B protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 584 IML*NFCIVHFFSIFSISVENFILLLLAIFVKRDTKFLLHVLMYRYTKQHSYV*LKFIS 408
           + L + CI   F    + + NFI LL+ +F+K   K L   LMY Y     Y  L F+S
Sbjct: 10  LRLIHLCIALTFFTSGLCI-NFIQLLMHVFIKPIDKRLFRKLMY-YACYSLYSQLIFVS 66


>AE014296-2723|AAF49471.1|  386|Drosophila melanogaster CG4729-PA,
           isoform A protein.
          Length = 386

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 584 IML*NFCIVHFFSIFSISVENFILLLLAIFVKRDTKFLLHVLMYRYTKQHSYV*LKFIS 408
           + L + CI   F    + + NFI LL+ +F+K   K L   LMY Y     Y  L F+S
Sbjct: 10  LRLIHLCIALTFFTSGLCI-NFIQLLMHVFIKPIDKRLFRKLMY-YACYSLYSQLIFVS 66


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,691,973
Number of Sequences: 53049
Number of extensions: 444005
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)