Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0662
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ...    30   1.7  
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ...    30   1.7  
At3g28820.1 68416.m03596 expressed protein  ; expression support...    28   5.1  
At3g28810.1 68416.m03595 hypothetical protein                          28   5.1  
At3g08870.1 68416.m01031 lectin protein kinase, putative similar...    27   8.9  

>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 404

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 222 CRYNYPMHVHYRVHVYKDKTSREEI*RK*CTYF 124
           CRYN+P H+   V  YK++   E I +  C YF
Sbjct: 68  CRYNHPTHLPQDVAYYKEELP-ERIGQPDCEYF 99


>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 404

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 222 CRYNYPMHVHYRVHVYKDKTSREEI*RK*CTYF 124
           CRYN+P H+   V  YK++   E I +  C YF
Sbjct: 68  CRYNHPTHLPQDVAYYKEELP-ERIGQPDCEYF 99


>At3g28820.1 68416.m03596 expressed protein  ; expression supported
           by MPSS
          Length = 434

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 493 TKIARRRSMKFSTLIENIEKKCTMQKFYNIMHKR 594
           T++    S   ST I N+EKKC  ++ Y +  ++
Sbjct: 271 TQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQ 304


>At3g28810.1 68416.m03595 hypothetical protein 
          Length = 434

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 493 TKIARRRSMKFSTLIENIEKKCTMQKFYNIMHKR 594
           T++    S   ST I N+EKKC  ++ Y +  ++
Sbjct: 271 TQVEEETSKDVSTFIMNLEKKCPQKEEYKVFFEQ 304


>At3g08870.1 68416.m01031 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 693

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 513 PPPRNFRKKGYKVFASRINV*IYQTTFVCLVKIY*CVLYE--LQSRDIFKN 367
           PPPR   KKGY      + V +   T V LV ++  V+Y+  +Q  D  ++
Sbjct: 297 PPPRLSNKKGYNSQVIVLIVALSIVTLVLLVLLFIFVMYKRRIQEEDTLED 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,533,477
Number of Sequences: 28952
Number of extensions: 215001
Number of successful extensions: 410
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)