Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0661
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 97 2e-21
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 36 0.006
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 32 0.068
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 31 0.12
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 29 0.84
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 27 1.9
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 27 2.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 7.8
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EPT++ + +P + E+FGPVL++YVY D ++D DLI T+T + LTG+IFA+D+V
Sbjct: 415 EPTVLLSKNPKHDIFVNELFGPVLSVYVYEDDNLDAVCDLIDTTTPYGLTGSIFAQDRVV 474
Query: 187 LKKAYENLKMTAGNFYINDKSTG 255
++K + L+ AGNFYINDK TG
Sbjct: 475 VRKLTDRLRNAAGNFYINDKCTG 497
Score = 59.3 bits (137), Expect = 5e-10
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3
Query: 255 SVVGQQPFGGGRMSGTNDKAGGPNYVMRWTTPQSIKETFVPLTDIDYP 398
+VVG+QPFGG R SGTNDKAG + R+ +P+SIK+TF + YP
Sbjct: 498 AVVGEQPFGGARASGTNDKAGSGMILSRFVSPRSIKDTFAYADSVLYP 545
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PT+ H+K+ EEIFGPVL + ++ ++ ++L S ++ L +F+ + L
Sbjct: 387 PTVFTNVQTHNKIWREEIFGPVLAVKTFHTN--EEALELANDS-EYGLGSGVFSTNPKTL 443
Query: 190 KKAYENLK 213
+ N++
Sbjct: 444 EFFSNNIE 451
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.3 bits (70), Expect = 0.068
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKD--IDKTMDLIGTSTKFALTGAIFAKDQV 183
PTI + ++ EEIFGPV+ I + +D I+K +T + L F KD
Sbjct: 380 PTIFADCSENMTIVKEEIFGPVVAISKFKTEDEAIEK-----ANNTTYGLAAMCFTKD-- 432
Query: 184 FLKKAYE-NLKMTAGNFYIN 240
L++A+ + ++ AG +IN
Sbjct: 433 -LERAHRVSDELEAGMVFIN 451
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PT++ K+ EE F P+ V+ K + ++ I T+F L ++F +D+
Sbjct: 358 PTLLVDATNEMKIAQEECFAPIAL--VFRAKSPEHALE-IANGTEFGLGASVFGRDKQLC 414
Query: 190 KKAYENLKMTAGNFYIND 243
+ +NL+ G +ND
Sbjct: 415 QYFTDNLE--TGMVAVND 430
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 28.7 bits (61), Expect = 0.84
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EPTI+ + EEIFGPVL + + K I++ + G ++ + L + +
Sbjct: 384 EPTILSNVTEDMAVGKEEIFGPVLAVIKF--KTIEEAIRR-GNNSTYGLAAGVHTNNITN 440
Query: 187 LKKAYENLKMTAGNFYIN 240
K L+ AG ++N
Sbjct: 441 AIKVSNALE--AGTVWVN 456
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKD 177
EPT+I + EE FGPV ++ ++ +D + + L G +F+KD
Sbjct: 384 EPTVIINAKQGMLISEEETFGPVGALFKFDTED---EVVAWANDSPVGLAGYLFSKD 437
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKD 105
EPT++ + +EE FGP+ +++ ++D +
Sbjct: 379 EPTVLSGVTQDMLVASEETFGPLASVFKFDDTE 411
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 100 KDIDKTMDLIGTSTKFALTGAI--FAKDQVFLKKAYE 204
K+++KT DLI T + F L + F D +K YE
Sbjct: 154 KNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRRKHYE 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,941
Number of Sequences: 5004
Number of extensions: 47024
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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