Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0661
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0497 + 3946179-3946322,3947274-3947342,3948733-3948829,395... 42 5e-04
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 40 0.002
11_01_0550 + 4355857-4356051,4357287-4357355,4357429-4357561,435... 39 0.003
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 36 0.031
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 33 0.16
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 33 0.22
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 31 0.66
04_04_0660 - 27017692-27017928,27018101-27018250,27018337-270184... 31 0.66
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 31 0.66
02_05_0131 + 26098459-26098668,26098788-26098863,26101972-261021... 31 1.2
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 29 3.5
02_05_0127 - 26053055-26053306,26055415-26055564,26055657-260557... 28 6.2
02_01_0035 - 220036-221419,222050-222801 28 8.1
>12_01_0497 +
3946179-3946322,3947274-3947342,3948733-3948829,
3951827-3952033,3952149-3952264,3953189-3953293,
3953380-3953552,3953647-3953737,3953869-3954018,
3954482-3954724
Length = 464
Score = 41.9 bits (94), Expect = 5e-04
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PTI +M EEIFGP+L I + DK I ++ LI + TK AL +F KD L
Sbjct: 308 PTIFMDVPLDSGIMKEEIFGPLLPI-ITVDK-IHESFALINSMTK-ALAAYLFTKDSK-L 363
Query: 190 KKAYENLKMTAGNFYINDKSTGL 258
++ YE ++AG +ND + L
Sbjct: 364 QEQYE-AAISAGGMLVNDTAVHL 385
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/78 (29%), Positives = 44/78 (56%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EPTII D ++ EE+FGPVL + ++ + ++ ++L T + L GA+ + D+
Sbjct: 397 EPTIITDVDTSMQIWREEVFGPVLCVKEFSTE--EEAIEL-ANDTHYGLAGAVLSGDRER 453
Query: 187 LKKAYENLKMTAGNFYIN 240
++ E ++ AG ++N
Sbjct: 454 CQRLTE--EIDAGIIWVN 469
>11_01_0550 +
4355857-4356051,4357287-4357355,4357429-4357561,
4358248-4358454,4358601-4358716,4358814-4358918,
4359008-4359180,4359273-4359363,4359682-4359831,
4359928-4360173
Length = 494
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PT++ LM EEIFGP+L I V DK I+ ++ I + TK L +F KD+
Sbjct: 337 PTVLLDVPLDTTLMAEEIFGPLLPI-VTVDK-IEDSIQFINSRTK-PLAAYLFTKDKKLQ 393
Query: 190 KKAYENLKMTAGNFYIND 243
++ N + AG +ND
Sbjct: 394 EEFVSN--VPAGGMLVND 409
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQ 180
PT++ + K+M EE FGP+L I +N D+ + + +K+ L A+F+ +Q
Sbjct: 394 PTVLVNVNHTMKIMQEEAFGPILPIMKFNS---DEEVVKLANDSKYGLGCAVFSGNQ 447
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAK 174
+PTI+E + P ++ EE+FGPVL YV +++ + ++ I S L+ +IF K
Sbjct: 406 QPTIVEIS-PSAPVVREELFGPVL--YVMKVQNLKEAVE-INNSVPQGLSSSIFTK 457
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKD 177
EPTII ++ EE+FGPV+ + + ++ + T + L GA+ + D
Sbjct: 378 EPTIITNVSTSMQIWREEVFGPVICVKEFR---TEREAVELANDTHYGLAGAVISND 431
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYND 99
+PTI + ++ EEIFGPV +I +ND
Sbjct: 430 QPTIFSDVQDNMRIAQEEIFGPVQSILKFND 460
>04_04_0660 -
27017692-27017928,27018101-27018250,27018337-27018427,
27018512-27018672,27018783-27019015,27019119-27019325,
27021411-27021507,27021636-27021677,27021802-27022056
Length = 490
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EPTI+ +MTEEIFGP+L I K I+ ++ + + L F K+
Sbjct: 335 EPTILLNPPLDSAIMTEEIFGPLLPIITV--KKIEDSIAFVRARPR-PLAVYAFTKNAAL 391
Query: 187 LKKAYENLKMTAGNFYIND 243
++ E + ++G+ ND
Sbjct: 392 RRRIVE--ETSSGSVTFND 408
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EPTI + EEIFGPV+++ + K +++ ++ TK+ L I K+
Sbjct: 396 EPTIFVDVKEEMTIAQEEIFGPVMSLMKF--KTVEEAIEK-ANCTKYGLAAGIVTKNLNI 452
Query: 187 LKKAYENLKMTAGNFYIN 240
+++ AG ++N
Sbjct: 453 ANMVSRSVR--AGTVWVN 468
>02_05_0131 +
26098459-26098668,26098788-26098863,26101972-26102178,
26102311-26102435,26102740-26102900,26102977-26103067,
26103161-26103310,26103396-26103632
Length = 418
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTI 84
EPT++ +MTEE+FGP+L I
Sbjct: 263 EPTLLLNPPADSDVMTEEVFGPILPI 288
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKD 177
EPTI + EEIFGPV+ + + K +++ ++ T++ L + +D
Sbjct: 407 EPTIFTNVKDDMVIAREEIFGPVMCLMKF--KTVEEAIER-ANGTRYGLAAGLVTRD 460
>02_05_0127 -
26053055-26053306,26055415-26055564,26055657-26055747,
26055835-26055995,26056455-26056579,26056680-26056886,
26056936-26056996
Length = 348
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTI 84
EPTI+ +M EEIFGP+L I
Sbjct: 188 EPTIVLNPPFDSDIMMEEIFGPLLPI 213
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 279 GGGRMSGTNDKAGGPNYVMRWTTPQ--SIKE-TFVPLTDIDY 395
GGG G +D+A + + RW + SIKE T+ PL DIDY
Sbjct: 218 GGGGGGGGDDEAATESRLRRWPGDEETSIKEPTWRPL-DIDY 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,442
Number of Sequences: 37544
Number of extensions: 281298
Number of successful extensions: 514
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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