Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0661
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 101 4e-22
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 36 0.031
SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12) 34 0.096
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 31 1.2
SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 31 1.2
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 30 2.1
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) 29 2.7
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 523
Score = 101 bits (243), Expect = 4e-22
Identities = 42/83 (50%), Positives = 64/83 (77%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EPTI+ET++P++K+M EEIFGPV+ YVY D+ + MD++ + +F+LTGAIF +D F
Sbjct: 390 EPTIVETSNPYNKMMKEEIFGPVVCAYVYPDEKYKEMMDVVDNTNEFSLTGAIFGEDPTF 449
Query: 187 LKKAYENLKMTAGNFYINDKSTG 255
+++A + L+ + GNFY+NDK TG
Sbjct: 450 IEEARDALRESCGNFYVNDKCTG 472
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +3
Query: 255 SVVGQQPFGGGRMSGTNDKAGGPNYVMRWTTPQSIKETFVPLTDIDYPYMR 407
SVV QQPFGG RMSGTNDKAGGP Y+ RW +P S+KE + P YP ++
Sbjct: 473 SVVAQQPFGGARMSGTNDKAGGPMYLGRWVSPLSVKEAYEPQGSWRYPQLK 523
>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/78 (35%), Positives = 39/78 (50%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PTI+ P D +M EIFGP+L I + +D +D I K L IF+ Q +
Sbjct: 286 PTILTGVKPSDPVMENEIFGPILPIVSVD--SLDDAIDFINDRDK-PLALYIFSNKQESI 342
Query: 190 KKAYENLKMTAGNFYIND 243
K+ EN ++G F ND
Sbjct: 343 KRIQEN--TSSGGFCAND 358
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 HEPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQV 183
+ PT+I P K++ EE+FGPVL + + K I +T F L +++ ++
Sbjct: 987 YPPTLITNVQPVSKIVMEEVFGPVLVVLTFRTA---KEAVAIANNTNFGLGASVWTEN-- 1041
Query: 184 FLKKAYE-NLKMTAGNFYIN 240
L A E L M AG +IN
Sbjct: 1042 -LSLAMEVGLSMKAGAVWIN 1060
>SB_52934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVF 186
EP + + + EE FGPV+ I ++D D++ ++ T++ L +F KD
Sbjct: 144 EPAVFTNVEDDMFIAKEESFGPVVIISKFDDGDVEGVLE-SANGTEYGLASGVFTKDMSK 202
Query: 187 LKKAYENLKMTAGNFYIN 240
+ + L+ AG ++N
Sbjct: 203 ALRVADALE--AGTCFVN 218
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 46 LMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFLKKAYENL-KMTA 222
++ EEIFGPV+T+ + ++ T +T F L G IF +D L +A+ + + A
Sbjct: 650 VVKEEIFGPVMTVLTFQTEEEAVTR---ANNTTFGLAGGIFTRD---LNRAHRVIGSLQA 703
Query: 223 GNFYIN 240
G +IN
Sbjct: 704 GTCWIN 709
>SB_19772| Best HMM Match : Aldedh (HMM E-Value=5.9e-12)
Length = 211
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKD 177
+PT+ + ++ EEIFGPV+ I+ + KD++ ++ T + L G++ K+
Sbjct: 114 QPTVFSDVQDNMRIAQEEIFGPVMQIFRF--KDMNDIIER-ANKTTYGLAGSVMTKN 167
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +1
Query: 7 EPTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKD 177
+PT+ ++ EEIFGPV + + K +D+ ++ +T + L +F K+
Sbjct: 690 QPTVFSDVTDDMRIAKEEIFGPVQQLIKF--KSVDEVIER-ANNTTYGLAAGVFTKN 743
>SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PT++ P EEIFGPVL N ++ +++I + + AIF K
Sbjct: 119 PTVLSNVTPEMTCYKEEIFGPVLV--ALNADTLEDAVEIINRN-PYGNGTAIFTKSGAIA 175
Query: 190 KKAYENLKMTAGNFYIN 240
+K + K G IN
Sbjct: 176 RKFAQ--KANVGQIGIN 190
>SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKDQVFL 189
PT++ P EEIFGPVL N ++ +++I + + AIF K
Sbjct: 119 PTVLSNVTPEMTCYKEEIFGPVLV--ALNADTLEDAVEIINRN-PYGNGTAIFTKSGAIA 175
Query: 190 KKAYENLKMTAGNFYIN 240
+K + K G IN
Sbjct: 176 RKFAQ--KANVGQIGIN 190
>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 421
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/56 (21%), Positives = 30/56 (53%)
Frame = +1
Query: 10 PTIIETTDPHDKLMTEEIFGPVLTIYVYNDKDIDKTMDLIGTSTKFALTGAIFAKD 177
P ++ + + ++ EEIF PV+ +Y ++ D+ + + T+F L ++++
Sbjct: 306 PVVLGNCNSNMRIFNEEIFAPVIAVYKFS---TDEEVINLANKTRFGLASYFYSQN 358
>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
Length = 2008
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 358 IDCGVVHLMT*LGPPALSLVPDIRPPPNGC*PTTDQL 248
+ C HL T G P+ PD+R PP G P +L
Sbjct: 1531 VKCLTTHLTT-FGAPSKPSTPDVRTPPPGVEPAKHRL 1566
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 207 SQNDCWQLLYQ*QINWSVVGQQP 275
+Q CWQ+ Q Q+ W VGQ P
Sbjct: 254 TQAVCWQIKEQRQVIWLTVGQTP 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,094,641
Number of Sequences: 59808
Number of extensions: 313871
Number of successful extensions: 474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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