Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0659
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    98   9e-22
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   3.2  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   7.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +2

Query: 257 GDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXF 436
           GDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F                 
Sbjct: 233 GDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGL 291

Query: 437 IV*AHHIFTVGIDIDTRAYFTSAT 508
           +V +HH+FTVG+D+DTRAYF++AT
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAAT 315



 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 32/83 (38%), Positives = 41/83 (49%)
 Frame = +3

Query: 6   SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 185
           ++DLAI SL L GISS                   S  Q+PLF  A+ IT+         
Sbjct: 149 AIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPV 208

Query: 186 XAGAITILLTDRNLNTSFFDPAG 254
            AG + +L +DRNLNTSF+ P G
Sbjct: 209 LAGGLFMLFSDRNLNTSFYAPEG 231



 Score = 33.5 bits (73), Expect = 0.028
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +1

Query: 496 YFSY--LIIAVPTGIKIFR*LATIHGTQINYN 585
           YFS   ++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 310 YFSAATMVIAIPTGIKIFSWLATLTGGAIQWS 341



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 606 LGFVFLFQ*EGLPGVILANS 665
           +GF+ LF   GL GVIL+NS
Sbjct: 349 IGFLILFTIGGLTGVILSNS 368


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 265 WVSSPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTA 140
           W+++ AG   DV  F   N +VIA  +  +       +IP A
Sbjct: 383 WMNATAGGPRDVLLFFKENQLVIAGYREATMLKELEKIIPIA 424


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 349 YYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRY 477
           YY T   KK +   F  +LCYT       Y      ++C Y Y
Sbjct: 190 YYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHY 232


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 265 WVSSPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTA 140
           W+     S  DV K      +V+A  + GS       +IPTA
Sbjct: 379 WIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTA 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,857
Number of Sequences: 5004
Number of extensions: 37072
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)