Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0659
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   34   0.12 
SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)              29   4.5  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     28   7.9  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     28   7.9  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 493 FYFSYLIIAVPTGIKIFR*LATIHGTQI 576
           F  + +IIAVPTGIK+F  LAT++G  I
Sbjct: 9   FTAATMIIAVPTGIKVFSWLATLYGGAI 36



 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +3

Query: 606 LGFVFLFQ*EGLPGVILANS 665
           +GFVFLF   GL GVILANS
Sbjct: 46  IGFVFLFTIGGLTGVILANS 65


>SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)
          Length = 698

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +1

Query: 325 TRIW-YNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRY*YTSIFYF 501
           TR W +N  Y FT++      WLF     YT   ++    L ++   C  R   T  + F
Sbjct: 424 TRRWLFNTLYTFTKRSLVTRRWLFNTLYTYTERGLVTRRWLFNTLYTCTERSLVTRRWLF 483

Query: 502 SYLIIAVPTGI 534
           + L      G+
Sbjct: 484 NTLYTYTERGL 494


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 313 YFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRY*YTSI 492
           Y N    W   SY         ++WL+++ L   S W+ + Y  + SY  C Y+     +
Sbjct: 57  YLNVLSYWLYKSYL-----NVLSYWLYKSFLNVLSYWLFKSYLNALSY--CPYKSYLNVL 109

Query: 493 FYFSY 507
            Y+ Y
Sbjct: 110 LYWPY 114


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 313 YFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRY*YTSI 492
           Y N    W   SY         ++WL+++ L   S W+ + Y  + SY  C Y+     +
Sbjct: 41  YLNVLSYWLYKSYL-----NVLSYWLYKSFLNVLSYWLFKSYLNALSY--CPYKSYLNVL 93

Query: 493 FYFSY 507
            Y+ Y
Sbjct: 94  LYWPY 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,398
Number of Sequences: 59808
Number of extensions: 242329
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)