Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0658
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 547 GPPDGECLPSPMDSVXPGAELSRCPQMFHQTAGESAHLMLS 425
           GP   E  P  ++S      +  C  M+H+T  E    + S
Sbjct: 515 GPQITELEPETIESQDAITRIYACGTMWHETPEEMMEFLKS 555


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 547 GPPDGECLPSPMDSVXPGAELSRCPQMFHQTAGESAHLMLS 425
           GP   E  P  ++S      +  C  M+H+T  E    + S
Sbjct: 515 GPQITELEPETIESQDAITRIYACGTMWHETPEEMMEFLKS 555


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 544  PPDGECLPSPMDSVXPGAELSRCP 473
            P  G  +P P  S  PG+  S+ P
Sbjct: 1105 PLKGTAVPPPSGSSGPGSTGSKSP 1128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,770
Number of Sequences: 336
Number of extensions: 2551
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)