Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0658
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.3  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   5.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.1  

>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 506 SNXRGRAKPLPTNVSSNCR*VSSPDVKSLVLTTKLDPYNWNDLDK 372
           S+ R +A       S   R    P  ++L ++T +DP N ++LD+
Sbjct: 76  SSDRSKASAKEDLFSEAFRMAEQPPAEALTISTPVDPINIDELDR 120


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 582 LFYCPCRXKEHTAHLM 535
           LFYC CR  E+  HL+
Sbjct: 289 LFYCMCRRDEYGCHLV 304


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 527 FTVTHGLSNXRGRAKPLPTNVSS 459
           F+  HG SN    A P+P   SS
Sbjct: 204 FSSKHGFSNALSTASPIPVRTSS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,400
Number of Sequences: 5004
Number of extensions: 40124
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)