Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0658
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 614 PNPCPHDTTPLC 579
           PNPC H TT  C
Sbjct: 432 PNPCTHTTTNGC 443


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 614 PNPCPHDTTPLC 579
           PNPC H TT  C
Sbjct: 418 PNPCTHTTTNGC 429


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 614 PNPCPHDTTPLC 579
           PNPC H TT  C
Sbjct: 452 PNPCTHTTTNGC 463


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 614 PNPCPHDTTPLC 579
           PNPC H TT  C
Sbjct: 401 PNPCTHTTTNGC 412


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 547 GPPDGECLPSPMDSVXPGAELSR 479
           G  D E  P+P   + PG ++++
Sbjct: 373 GRADEEAAPAPQHLIHPGKDINK 395


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 547 GPPDGECLPSPMDSVXPGAELSR 479
           G  D E  P+P   + PG ++++
Sbjct: 373 GRADEEAAPAPQHLIHPGKDINK 395


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 547 GPPDGECLPSPMDSVXPGAELSR 479
           G  D E  P+P   + PG ++++
Sbjct: 311 GRADEEAAPAPQHLIHPGKDINK 333


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +3

Query: 483 LSSAPGITESMGDGKHSPSGGPYALXAYKGNKTKRCGVVGTRVRIRSSSI 632
           + SA  I     DGKH      + L +Y G K     ++G    I  + +
Sbjct: 166 IRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPDGTIIGDPANIEFTEL 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,397
Number of Sequences: 438
Number of extensions: 2778
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)